List of publications

DokumenttypErscheinungsjahrTitelAutorenHerausgeber
article2024miRNATissueAtlas 2025: an update to the uniformly processed and annotated human and mouse non-coding RNA tissue atlasRishik, Shusruto; Hirsch, Pascal; Grandke, Friederike; Fehlmann, Tobias; Keller, Andreas
article2024Artificial Intelligence-Derived Risk Prediction: A Novel Risk Calculator Using Office and Ambulatory Blood PressureGuimarães, Pedro; Keller, Andreas; Böhm, Michael; Lauder, Lucas; Fehlmann, Tobias; Ruilope, Luis M.; Vinyoles, Ernest; Gorostidi, Manuel; Segura, Julián; Ruiz-Hurtado, Gema; Staplin, Natalie; Williams, Bryan; de la Sierra, Alejandro; Mahfoud, Felix
article2024SingmiR: a single-cell miRNA alignment and analysis toolEngel, Annika; Rishik, Shusruto; Hirsch, Pascal; Keller, Verena; Fehlmann, Tobias; Kern, Fabian; Keller, Andreas
article2024Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genesEngel, Annika; Ludwig, Nicole; Grandke, Friederike; Wagner, Viktoria; Kern, Fabian; Fehlmann, Tobias; Schmartz, Georges P.; Aparicio-Puerta, Ernesto; Henn, Dominic; Walch-Rückheim, Barbara; Hannig, Matthias; Rupf, Stefan; Meese, Eckart; Laschke, Matthias W.; Keller, Andreas
article2023Ageing-associated small RNA cargo of extracellular vesiclesKern, Fabian; Kuhn, Thomas; Ludwig, Nicole; Simon, Martin; Gröger, Laura; Fabis, Natalie; Aparicio-Puerta, Ernesto; Salhab, Abdulrahman; Fehlmann, Tobias; Hahn, Oliver; Engel, Annika; Wagner, Viktoria; Koch, Marcus; Winek, Katarzyna; Soreq, Hermona; Nazarenko, Irina; Fuhrmann, Gregor; Wyss-Coray, Tony; Meese, Eckart; Keller, Verena; Laschke, Matthias W.; Keller, Andreas
article2023Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissuesWagner, Viktoria; Kern, Fabian; Hahn, Oliver; Schaum, Nicholas; Ludwig, Nicole; Fehlmann, Tobias; Engel, Annika; Henn, Dominic; Rishik, Shusruto; Isakova, Alina; Tan, Michelle; Sit, Rene; Neff, Norma; Hart, Martin; Meese, Eckart; Quake, Steve; Wyss-Coray, Tony; Keller, Andreas
article2023miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizationsAparicio-Puerta, Ernesto; Hirsch, Pascal; Schmartz, Georges P.; Kern, Fabian; Fehlmann, Tobias; Keller, Andreas
article2022BusyBee Web: towards comprehensive and differential composition-based metagenomic binningSchmartz, Georges P.; Hirsch, Pascal; Amand, Jérémy; Dastbaz, Jan; Fehlmann, Tobias; Kern, Fabian; Müller, Rolf; Keller, Andreas
article2022A CYPome-wide study reveals new potential players in the pathogenesis of Parkinson's diseaseHartz, Philip; Fehlmann, Tobias; Wagenpfeil, Gudrun; Unger, Marcus Michael; Bernhardt, Rita
article2022isomiRdb : microRNA expression at isoform resolutionAparicio-Puerta, Ernesto; Hirsch, Pascal; Schmartz, Georges P.; Fehlmann, Tobias; Keller, Verena; Engel, Annika; Kern, Fabian; Hackenberg, Michael; Keller, Andreas
article2022Molecular hallmarks of heterochronic parabiosis at single-cell resolutionPálovics, Róbert; Keller, Andreas; Schaum, Nicholas; Tan, Weilun; Fehlmann, Tobias; Borja, Michael; Kern, Fabian; Bonanno, Liana; Calcuttawala, Kruti; Webber, James; McGeever, Aaron; Luo, Jian; Pisco, Angela Oliveira; Karkanias, Jim; Neff, Norma F.; Darmanis, Spyros; Quake, Stephen R.; Wyss-Coray, Tony
article2021Marathon-Induced Cardiac Strain as Model for the Evaluation of Diagnostic microRNAs for Acute Myocardial InfarctionShirvani Samani, Omid; Scherr, Johannes; Kayvanpour, Elham; Haas, Jan; Lehmann, David H.; Gi, Weng-Tein; Frese, Karen S.; Nietsch, Rouven; Fehlmann, Tobias; Sandke, Steffi; Weis, Tanja; Keller, Andreas; Katus, Hugo A.; Halle, Martin; Frey, Norbert; Meder, Benjamin; Sedaghat-Hamedani, Farbod
article2021Sex Differences in Cardiovascular Research: A Scientometric AnalysisMillenaar, Dominic; Dillmann, Markus; Fehlmann, Tobias; Flohr, Alexander; Mehran, Roxana; Al-Lamee, Rasha; Lauder, Lucas; Ukena, Christian; Böhm, Michael; Keller, Andreas; Mahfoud, Felix
doctoralThesis2021From tools and databases to clinically relevant applications in miRNA researchFehlmann, Tobias
article2021Swarm Learning for decentralized and confidential clinical machine learningWarnat-Herresthal, Stefanie; Schultze, Hartmut; Shastry, Krishnaprasad Lingadahalli; Manamohan, Sathyanarayanan; Mukherjee, Saikat; Garg, Vishesh; Sarveswara, Ravi; Händler, Kristian; Pickkers, Peter; Aziz, N. Ahmad; Ktena, Sofia; Tran, Florian; Bitzer, Michael; Ossowski, Stephan; Casadei, Nicolas; Herr, Christian; Petersheim, Daniel; Behrends, Uta; Kern, Fabian; Fehlmann, Tobias; Schommers, Philipp; Lehmann, Clara; Augustin, Max; Rybniker, Jan; Altmüller, Janine; Mishra, Neha; Bernardes, Joana P.; Krämer, Benjamin; Bonaguro, Lorenzo; Schulte-Schrepping, Jonas; De Domenico, Elena; Siever, Christian; Kraut, Michael; Desai, Milind; Monnet, Bruno; Saridaki, Maria; Siegel, Charles Martin; Drews, Anna; Nuesch-Germano, Melanie; Theis, Heidi; Heyckendorf, Jan; Schreiber, Stefan; Kim-Hellmuth, Sarah; Nattermann, Jacob; Skowasch, Dirk; Kurth, Ingo; Keller, Andreas; Bals, Robert; Nürnberg, Peter; Rieß, Olaf; Rosenstiel, Philip; Netea, Mihai G.; Theis, Fabian; Mukherjee, Sach; Backes, Michael; Aschenbrenner, Anna C.; Ulas, Thomas; Breteler, Monique M. B.; Giamarellos-Bourboulis, Evangelos J.; Kox, Matthijs; Becker, Matthias; Cheran, Sorin; Woodacre, Michael S.; Goh, Eng Lim; Schultze, Joachim L.
article2021Differential degradation of RNA species by autophagy-related pathways in ArabidopsisHickl, Daniel; Drews, Franziska; Girke, Christopher; Zimmer, David; Mühlhaus, Timo; Hauth, Jan; Nordström, Karl; Trentmann, Oliver; Neuhaus, Ekkehard H.; Scheuring, David; Fehlmann, Tobias; Keller, Andreas; Simon, Martin; Möhlmann, Torsten
article2021PLSDB: advancing a comprehensive database of bacterial plasmidsSchmartz, Georges P.; Hartung, Anna; Hirsch, Pascal; Kern, Fabian; Fehlmann, Tobias; Müller, Rolf; Keller, Andreas
article2021miRNATissueAtlas2: an update to the human miRNA tissue atlasKeller, Andreas; Gröger, Laura; Tschernig, Thomas; Solomon, Jeffrey; Laham, Omar; Schaum, Nicholas; Wagner, Viktoria; Kern, Fabian; Schmartz, Georges Pierre; Li, Yongping; Borcherding, Adam; Meier, Carola; Wyss-Coray, Tony; Meese, Eckart; Fehlmann, Tobias; Ludwig, Nicole
article2021miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scaleFehlmann, Tobias; Kern, Fabian; Laham, Omar; Backes, Christina; Solomon, Jeffrey; Hirsch, Pascal; Volz, Carsten; Müller, Rolf; Keller, Andreas
article2021Aviator: a web service for monitoring the availability of web servicesFehlmann, Tobias; Kern, Fabian; Hirsch, Pascal; Steinhaus, Robin; Seelow, Dominik; Keller, Andreas
article2021RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson's diseaseCraig, David W.; Hutchins, Elizabeth; Violich, Ivo; Alsop, Eric; Gibbs, J. Raphael; Levy, Shawn; Robison, Madison; Prasad, Nripesh; Foroud, Tatiana; Crawford, Karen L.; Toga, Arthur W.; Whitsett, Timothy G.; Kim, Seungchan; Casey, Bradford; Reimer, Alyssa; Hutten, Samantha J.; Frasier, Mark; Kern, Fabian; Fehlman, Tobias; Keller, Andreas; Cookson, Mark R.; Van Keuren-Jensen, Kendall
Other2021Vesicle-bound regulatory RNAs are associated with tissue agingKern, Fabian; Kuhn, Thomas; Ludwig, Nicole; Simon, Martin; Gröger, Laura; Fabis, Natalie; Salhab, Abdulrahman; Fehlmann, Tobias; Hahn, Oliver; Engel, Annika; Koch, Marcus; Koehler, Jana; Winek, Katarzyna; Soreq, Hermona; Fuhrmann, Gregor; Wyss-Coray, Tony; Meese, Eckart; Laschke, Matthias W.; Keller, Andreas
article2021Deep sequencing of sncRNAs reveals hallmarks and regulatory modules of the transcriptome during Parkinson's disease progressionKern, Fabian; Fehlmann, Tobias; Violich, Ivo; Alsop, Eric; Hutchins, Elizabeth; Kahraman, Mustafa; Grammes, Nadja L.; Guimarães, Pedro; Backes, Christina; Poston, Kathleen L.; Casey, Bradford; Balling, Rudi; Geffers, Lars; Krüger, Rejko; Galasko, Douglas; Mollenhauer, Brit; Meese, Eckart; Wyss-Coray, Tony; Craig, David W.; Van Keuren-Jensen, Kendall; Keller, Andreas
article2020Wissenschaftslandschaft DeutschlandMillenaar, Dominic; Fehlmann, Tobias; Ukena, Christian; Scholz, Sean; Keller, Andreas; Mahfoud, Felix; Böhm, Michael
article2020Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosisKeller, Andreas; Fehlmann, Tobias; Backes, Christina; Kern, Fabian; Gislefoss, Randi; Langseth, Hilde; Rounge, Trine B.; Ludwig, Nicole; Meese, Eckart
article2020Research in Atrial Fibrillation: A Scientometric Analysis Using the Novel Web Application SciPEMillenaar, Dominic; Fehlmann, Tobias; Scholz, Sean; Pavlicek, Valérie; Flohr, Alexander; Dillmann, Markus; Böhm, Michael; Keller, Andreas; Mahfoud, Felix; Ukena, Christian
article2020Ageing hallmarks exhibit organ-specific temporal signaturesSchaum, Nicholas; Lehallier, Benoit; Hahn, Oliver; Pálovics, Róbert; Hosseinzadeh, Shayan; Lee, Song E.; Sit, Rene; Lee, Davis P; Losada, Patricia Morán; Zardeneta, Macy E.; Fehlmann, Tobias; Webber, James T.; McGeever, Aaron; Calcuttawala, Kruti; Zhang, Hui; Berdnik, Daniela; Mathur, Vidhu; Tan, Weilun; Zee, Alexander; Tan, Michelle; Pisco, Angela Oliveira; Karkanias, Jim; Neff, Norma F.; Keller, Andreas; Darmanis, Spyros; Quake, Stephen R.; Wyss-Coray, Tony
article2020Research Output and International Cooperation Among Countries During the COVID-19 Pandemic: Scientometric AnalysisGrammes, Nadja; Millenaar, Dominic; Fehlmann, Tobias; Kern, Fabian; Böhm, Michael; Mahfoud, Felix; Keller, Andreas
article2020A mouse tissue atlas of small noncoding RNAIsakova, Alina; Fehlmann, Tobias; Keller, Andreas; Quake, Stephen R.
article2020miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systemsKern, Fabian; Fehlmann, Tobias; Solomon, Jeffrey; Schwed, Louisa; Grammes, Nadja; Backes, Christina; Van Keuren-Jensen, Kendall; Craig, David Wesley; Meese, Eckart; Keller, Andreas
article2020miRSwitch: detecting microRNA arm shift and switch eventsKern, Fabian; Amand, Jeremy; Senatorov, Ilya; Isakova, Alina; Backes, Christina; Meese, Eckart; Keller, Andreas; Fehlmann, Tobias
article2020Common diseases alter the physiological age-related blood microRNA profileFehlmann, Tobias; Lehallier, Benoit; Schaum, Nicholas; Hahn, Oliver; Kahraman, Mustafa; Li, Yongping; Grammes, Nadja; Geffers, Lars; Backes, Christina; Balling, Rudi; Kern, Fabian; Krüger, Rejko; Lammert, Frank; Ludwig, Nicole; Meder, Benjamin; Fromm, Bastian; Maetzler, Walter; Berg, Daniela; Brockmann, Kathrin; Deuschle, Christian; von Thaler, Anna-Katharina; Eschweiler, Gerhard W; Milman, Sofiya; Barziliai, Nir; Reichert, Matthias; Wyss-Coray, Tony; Meese, Eckart; Keller, Andreas
article2020On the lifetime of bioinformatics web servicesKern, Fabian; Fehlmann, Tobias; Keller, Andreas
article2020CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencingLi, Yongping; Fehlmann, Tobias; Borcherding, Adam; Drmanac, Snezana; Liu, Sophie; Groeger, Laura; Xu, Chongjun; Callow, Matthew; Villarosa, Christian; Jorjorian, Alexander; Kern, Fabian; Grammes, Nadja; Meese, Eckart; Jiang, Hui; Drmanac, Radoje; Ludwig, Nicole; Keller, Andreas
article2020Encyclopedia of tools for the analysis of miRNA isoformsSchmartz, Georges Pierre; Kern, Fabian; Fehlmann, Tobias; Wagner, Viktoria; Fromm, Bastian; Keller, Andreas
article2019Deep-learning based detection of gastric precancerous conditionsGuimarães, Pedro; Keller, Andreas; Fehlmann, Tobias; Lammert, Frank; Casper, Markus
article2019DynaVenn: web-based computation of the most significant overlap between ordered setsAmand, Jérémy; Fehlmann, Tobias; Backes, Christina; Keller, Andreas
article2019Prospect and challenge of detecting dynamic gene copy number increases in stem cells by whole genome sequencingFischer, Ulrike; Backes, Christina; Fehlmann, Tobias; Galata, Valentina; Keller, Andreas; Meese, Eckart
article2019An estimate of the total number of true human miRNAsAlles, Julia; Fehlmann, Tobias; Fischer, Ulrike; Backes, Christina; Galata, Valentina; Minet, Marie; Hart, Martin; Abu-Halima, Masood; Grässer, Friedrich A.; Lenhof, Hans-Peter; Keller, Andreas; Meese, Eckart
article2019The sncRNA Zoo: a repository for circulating small noncoding RNAs in animalsFehlmann, Tobias; Backes, Christina; Pirritano, Marcello; Laufer, Thomas; Galata, Valentina; Kern, Fabian; Kahraman, Mustafa; Gasparoni, Gilles; Ludwig, Nicole; Lenhof, Hans-Peter; Gregersen, Henrike A.; Francke, Richard; Meese, Eckart; Simon, Martin; Keller, Andreas
article2019Machine Learning to Detect Alzheimer's Disease from Circulating Non-coding RNAsLudwig, Nicole; Fehlmann, Tobias; Kern, Fabian; Gogol, Manfred; Maetzler, Walter; Deutscher, Stephanie; Gurlit, Simone; Schulte, Claudia; von Thaler, Anna-Katharina; Deuschle, Christian; Metzger, Florian; Berg, Daniela; Suenkel, Ulrike; Keller, Verena; Backes, Christina; Lenhof, Hans-Peter; Meese, Eckart; Keller, Andreas
article20194-miRNA Score Predicts the Individual Metastatic Risk of Renal Cell Carcinoma PatientsHeinzelmann, Joana; Arndt, Madeleine; Pleyers, Ramona; Fehlmann, Tobias; Hoelters, Sebastian; Zeuschner, Philip; Vogt, Alexander; Pryalukhin, Alexey; Schaeffeler, Elke; Bohle, Rainer M.; Gajda, Mieczyslaw; Janssen, Martin; Stoeckle, Michael; Junker, Kerstin
article2019Spring is in the air: seasonal profiles indicate vernal change of miRNA activityLudwig, Nicole; Hecksteden, Anne; Kahraman, Mustafa; Fehlmann, Tobias; Laufer, Thomas; Kern, Fabian; Meyer, Tim; Meese, Eckart; Keller, Andreas; Backes, Christina
article2019Comparative Analysis of Biochemical Biases by Ligation- and Template-Switch-Based Small RNA Library Preparation ProtocolsMeistertzheim, Morgane; Fehlmann, Tobias; Drews, Franziska; Pirritano, Marcello; Gasparoni, Gilles; Keller, Andreas; Simon, Martin
article2019Contemporary scientometric analyses using a novel web application: the science performance evaluation (SciPE) approachScholz, Sean S.; Dillmann, Markus; Flohr, Alexander; Backes, Christina; Fehlmann, Tobias; Millenaar, Dominic; Ukena, Christian; Böhm, Michael; Keller, Andreas; Mahfoud, Felix
article2019What's the target: understanding two decades of in silico microRNA-target predictionKern, Fabian; Backes, Christina; Hirsch, Pascal; Fehlmann, Tobias; Hart, Martin; Meese, Eckart; Keller, Andreas
article2019miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary DatabaseKehl, Tim; Kern, Fabian; Backes, Christina; Fehlmann, Tobias; Stöckel, Daniel; Meese, Eckart; Lenhof, Hans-Peter; Keller, Andreas
article2019Systematic Assessment of Blood-Borne MicroRNAs Highlights Molecular Profiles of Endurance Sport and Carbohydrate UptakeKern, Fabian; Ludwig, Nicole; Backes, Christina; Maldener, Esther; Fehlmann, Tobias; Suleymanov, Artur; Meese, Eckart; Hecksteden, Anne; Keller, Andreas; Meyer, Tim
article2018MicroRNA in diagnosis and therapy monitoring of early-stage triple-negative breast cancerKahraman, Mustafa; Röske, Anne; Laufer, Thomas; Fehlmann, Tobias; Backes, Christina; Kern, Fabian; Kohlhaas, Jochen; Schrörs, Hannah; Saiz, Anna; Zabler, Cassandra; Ludwig, Nicole; Fasching, Peter A.; Strick, Reiner; Rübner, Matthias; Beckmann, Matthias W.; Meese, Eckart; Keller, Andreas; Schrauder, Michael G.
article2018Modulation of intracellular calcium signaling by microRNA-34a-5pDiener, Caroline; Hart, Martin; Alansary, Dalia; Poth, Vanessa; Walch-Rückheim, Barbara; Menegatti, Jennifer; Grässer, Friedrich; Fehlmann, Tobias; Rheinheimer, Stefanie; Niemeyer, Barbara A.; Lenhof, Hans-Peter; Keller, Andreas; Meese, Eckart
article2018Genome-wide MicroRNA Expression Profiles in COPD: Early Predictors for Cancer DevelopmentKeller, Andreas; Fehlmann, Tobias; Ludwig, Nicole; Kahraman, Mustafa; Laufer, Thomas; Backes, Christina; Vogelmeier, Claus; Diener, Caroline; Biertz, Frank; Herr, Christian; Jörres, Rudolf A.; Lenhof, Hans-Peter; Meese, Eckart; Bals, Robert
article2018PLSDB: a resource of complete bacterial plasmidsGalata, Valentina; Fehlmann, Tobias; Backes, Christina; Keller, Andreas
article2018Epstein-Barr Virus Infection of Cell Lines Derived from Diffuse Large B-Cell Lymphomas Alters MicroRNA Loading of the Ago2 ComplexAyoubian, Hiresh; Ludwig, Nicole; Fehlmann, Tobias; Menegatti, Jennifer; Gröger, Laura; Anastasiadou, Eleni; Trivedi, Pankaj; Keller, Andreas; Meese, Eckart; Grässer, Friedrich A.
article2017IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA-target interactionsPalmieri, Valeria; Backes, Christina; Ludwig, Nicole; Fehlmann, Tobias; Kern, Fabian; Meese, Eckart; Keller, Andreas
article2017miRCarta: a central repository for collecting miRNA candidatesBackes, Christina; Fehlmann, Tobias; Kern, Fabian; Kehl, Tim; Lenhof, Hans-Peter; Meese, Eckart; Keller, Andreas
article2017A review of databases predicting the effects of SNPs in miRNA genes or miRNA-binding sitesFehlmann, Tobias; Sahay, Shashwat; Keller, Andreas; Backes, Christina
article2017Technical Stability and Biological Variability in MicroRNAs from Dried Blood Spots : A Lung Cancer Therapy-Monitoring ShowcaseKahraman, Mustafa; Laufer, Thomas; Backes, Christina; Schrörs, Hannah; Fehlmann, Tobias; Ludwig, Nicole; Kohlhaas, Jochen; Meese, Eckart; Wehler, Thomas; Bals, Robert; Keller, Andreas
Welcome
ORCID: iD icon https://orcid.org/0000-0003-1967-2918
Name:Fehlmann, Tobias
Faculty: M - Medizinische Fakultät
Department: M - Medizinische Biometrie, Epidemiologie und medizinische Informatik
Professorship:M - Univ.-Prof. Dr. Andreas Keller
Display style: