| Dokumenttyp | Erscheinungsjahr | Titel | Autoren | Herausgeber |
|---|
| article | 2024 | Experimental capture of miRNA targetomes: disease-specific 3'UTR library-based miRNA targetomics for Parkinson's disease | Hart, Martin; Kern, Fabian; Fecher-Trost, Claudia; Krammes, Lena; Aparicio, Ernesto; Engel, Annika; Hirsch, Pascal; Wagner, Viktoria; Keller, Verena; Schmartz, Georges Pierre; Rheinheimer, Stefanie; Diener, Caroline; Fischer, Ulrike; Mayer, Jens; Meyer, Markus R.; Flockerzi, Veit; Keller, Andreas; Meese, Eckart | |
| article | 2024 | SingmiR: a single-cell miRNA alignment and analysis tool | Engel, Annika; Rishik, Shusruto; Hirsch, Pascal; Keller, Verena; Fehlmann, Tobias; Kern, Fabian; Keller, Andreas | |
| article | 2024 | Mibianto: ultra-efficient online microbiome analysis through k-mer based metagenomics | Hirsch, Pascal; Molano, Leidy-Alejandra G.; Engel, Annika; Zentgraf, Jens; Rahmann, Sven; Hannig, Matthias; Müller, Rolf; Kern, Fabian; Keller, Andreas; Schmartz, Georges P. | |
| article | 2024 | Skin treatment with non-thermal plasma modulates the immune system through miR-223-3p and its target genes | Engel, Annika; Ludwig, Nicole; Grandke, Friederike; Wagner, Viktoria; Kern, Fabian; Fehlmann, Tobias; Schmartz, Georges P.; Aparicio-Puerta, Ernesto; Henn, Dominic; Walch-Rückheim, Barbara; Hannig, Matthias; Rupf, Stefan; Meese, Eckart; Laschke, Matthias W.; Keller, Andreas | |
| article | 2023 | Ageing-associated small RNA cargo of extracellular vesicles | Kern, Fabian; Kuhn, Thomas; Ludwig, Nicole; Simon, Martin; Gröger, Laura; Fabis, Natalie; Aparicio-Puerta, Ernesto; Salhab, Abdulrahman; Fehlmann, Tobias; Hahn, Oliver; Engel, Annika; Wagner, Viktoria; Koch, Marcus; Winek, Katarzyna; Soreq, Hermona; Nazarenko, Irina; Fuhrmann, Gregor; Wyss-Coray, Tony; Meese, Eckart; Keller, Verena; Laschke, Matthias W.; Keller, Andreas | |
| article | 2023 | Characterizing expression changes in noncoding RNAs during aging and heterochronic parabiosis across mouse tissues | Wagner, Viktoria; Kern, Fabian; Hahn, Oliver; Schaum, Nicholas; Ludwig, Nicole; Fehlmann, Tobias; Engel, Annika; Henn, Dominic; Rishik, Shusruto; Isakova, Alina; Tan, Michelle; Sit, Rene; Neff, Norma; Hart, Martin; Meese, Eckart; Quake, Steve; Wyss-Coray, Tony; Keller, Andreas | |
| article | 2023 | miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations | Aparicio-Puerta, Ernesto; Hirsch, Pascal; Schmartz, Georges P.; Kern, Fabian; Fehlmann, Tobias; Keller, Andreas | |
| article | 2023 | Atlas of the aging mouse brain reveals white matter as vulnerable foci | Hahn, Oliver; Foltz, Aulden G.; Atkins, Micaiah; Kedir, Blen; Moran-Losada, Patricia; Guldner, Ian H.; Munson, Christy; Kern, Fabian; Pálovics, Róbert; Lu, Nannan; Zhang, Hui; Kaur, Achint; Hull, Jacob; Huguenard, John R.; Grönke, Sebastian; Lehallier, Benoit; Partridge, Linda; Keller, Andreas; Wyss-Coray, Tony | |
| article | 2023 | ZEBRA: a hierarchically integrated gene expression atlas of the murine and human brain at single-cell resolution | Flotho, Matthias; Amand, Jérémy; Hirsch, Pascal; Grandke, Friederike; Wyss-Coray, Tony; Keller, Andreas; Kern, Fabian | |
| article | 2022 | BusyBee Web: towards comprehensive and differential composition-based metagenomic binning | Schmartz, Georges P.; Hirsch, Pascal; Amand, Jérémy; Dastbaz, Jan; Fehlmann, Tobias; Kern, Fabian; Müller, Rolf; Keller, Andreas | |
| article | 2022 | isomiRdb : microRNA expression at isoform resolution | Aparicio-Puerta, Ernesto; Hirsch, Pascal; Schmartz, Georges P.; Fehlmann, Tobias; Keller, Verena; Engel, Annika; Kern, Fabian; Hackenberg, Michael; Keller, Andreas | |
| article | 2022 | Dynamic and static circulating cancer microRNA biomarkers : a validation study | Abu-Halima, Masood; Keller, Andreas; Becker, Lea Simone; Fischer, Ulrike; Engel, Annika; Ludwig, Nicole; Kern, Fabian; Rounge, Trine B.; Langseth, Hilde; Meese, Eckart; Keller, Verena | |
| article | 2022 | A human brain vascular atlas reveals diverse mediators of Alzheimer's risk | Yang, Andrew C.; Vest, Ryan T.; Kern, Fabian; Lee, Davis P.; Agam, Maayan; Maat, Christina A.; Losada, Patricia M.; Chen, Michelle B.; Schaum, Nicholas; Khoury, Nathalie; Toland, Angus; Calcuttawala, Kruti; Shin, Heather; Pálovics, Róbert; Shin, Andrew; Wang, Elizabeth Y.; Luo, Jian; Gate, David; Schulz-Schaeffer, Walter J.; Chu, Pauline; Siegenthaler, Julie A.; McNerney, M Windy; Keller, Andreas; Wyss-Coray, Tony | |
| article | 2022 | Molecular hallmarks of heterochronic parabiosis at single-cell resolution | Pálovics, Róbert; Keller, Andreas; Schaum, Nicholas; Tan, Weilun; Fehlmann, Tobias; Borja, Michael; Kern, Fabian; Bonanno, Liana; Calcuttawala, Kruti; Webber, James; McGeever, Aaron; Luo, Jian; Pisco, Angela Oliveira; Karkanias, Jim; Neff, Norma F.; Darmanis, Spyros; Quake, Stephen R.; Wyss-Coray, Tony | |
| doctoralThesis | 2021 | Algorithms and Applications for non-coding RNAs in Aging | Kern, Fabian | |
| article | 2021 | Swarm Learning for decentralized and confidential clinical machine learning | Warnat-Herresthal, Stefanie; Schultze, Hartmut; Shastry, Krishnaprasad Lingadahalli; Manamohan, Sathyanarayanan; Mukherjee, Saikat; Garg, Vishesh; Sarveswara, Ravi; Händler, Kristian; Pickkers, Peter; Aziz, N. Ahmad; Ktena, Sofia; Tran, Florian; Bitzer, Michael; Ossowski, Stephan; Casadei, Nicolas; Herr, Christian; Petersheim, Daniel; Behrends, Uta; Kern, Fabian; Fehlmann, Tobias; Schommers, Philipp; Lehmann, Clara; Augustin, Max; Rybniker, Jan; Altmüller, Janine; Mishra, Neha; Bernardes, Joana P.; Krämer, Benjamin; Bonaguro, Lorenzo; Schulte-Schrepping, Jonas; De Domenico, Elena; Siever, Christian; Kraut, Michael; Desai, Milind; Monnet, Bruno; Saridaki, Maria; Siegel, Charles Martin; Drews, Anna; Nuesch-Germano, Melanie; Theis, Heidi; Heyckendorf, Jan; Schreiber, Stefan; Kim-Hellmuth, Sarah; Nattermann, Jacob; Skowasch, Dirk; Kurth, Ingo; Keller, Andreas; Bals, Robert; Nürnberg, Peter; Rieß, Olaf; Rosenstiel, Philip; Netea, Mihai G.; Theis, Fabian; Mukherjee, Sach; Backes, Michael; Aschenbrenner, Anna C.; Ulas, Thomas; Breteler, Monique M. B.; Giamarellos-Bourboulis, Evangelos J.; Kox, Matthijs; Becker, Matthias; Cheran, Sorin; Woodacre, Michael S.; Goh, Eng Lim; Schultze, Joachim L. | |
| article | 2021 | PLSDB: advancing a comprehensive database of bacterial plasmids | Schmartz, Georges P.; Hartung, Anna; Hirsch, Pascal; Kern, Fabian; Fehlmann, Tobias; Müller, Rolf; Keller, Andreas | |
| article | 2021 | Validation of human microRNA target pathways enables evaluation of target prediction tools | Kern, Fabian; Krammes, Lena; Danz, Karin; Diener, Caroline; Kehl, Tim; Küchler, Oliver; Fehlmann, Tobias; Kahraman, Mustafa; Rheinheimer, Stefanie; Aparicio-Puerta, Ernesto; Wagner, Sylvia; Ludwig, Nicole; Backes, Christina; Lenhof, Hans-Peter; von Briesen, Hagen; Hart, Martin; Keller, Andreas; Meese, Eckart | |
| article | 2021 | miRNATissueAtlas2: an update to the human miRNA tissue atlas | Keller, Andreas; Gröger, Laura; Tschernig, Thomas; Solomon, Jeffrey; Laham, Omar; Schaum, Nicholas; Wagner, Viktoria; Kern, Fabian; Schmartz, Georges Pierre; Li, Yongping; Borcherding, Adam; Meier, Carola; Wyss-Coray, Tony; Meese, Eckart; Fehlmann, Tobias; Ludwig, Nicole | |
| article | 2021 | miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale | Fehlmann, Tobias; Kern, Fabian; Laham, Omar; Backes, Christina; Solomon, Jeffrey; Hirsch, Pascal; Volz, Carsten; Müller, Rolf; Keller, Andreas | |
| article | 2021 | Aviator: a web service for monitoring the availability of web services | Fehlmann, Tobias; Kern, Fabian; Hirsch, Pascal; Steinhaus, Robin; Seelow, Dominik; Keller, Andreas | |
| article | 2021 | RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson's disease | Craig, David W.; Hutchins, Elizabeth; Violich, Ivo; Alsop, Eric; Gibbs, J. Raphael; Levy, Shawn; Robison, Madison; Prasad, Nripesh; Foroud, Tatiana; Crawford, Karen L.; Toga, Arthur W.; Whitsett, Timothy G.; Kim, Seungchan; Casey, Bradford; Reimer, Alyssa; Hutten, Samantha J.; Frasier, Mark; Kern, Fabian; Fehlman, Tobias; Keller, Andreas; Cookson, Mark R.; Van Keuren-Jensen, Kendall | |
| Other | 2021 | Vesicle-bound regulatory RNAs are associated with tissue aging | Kern, Fabian; Kuhn, Thomas; Ludwig, Nicole; Simon, Martin; Gröger, Laura; Fabis, Natalie; Salhab, Abdulrahman; Fehlmann, Tobias; Hahn, Oliver; Engel, Annika; Koch, Marcus; Koehler, Jana; Winek, Katarzyna; Soreq, Hermona; Fuhrmann, Gregor; Wyss-Coray, Tony; Meese, Eckart; Laschke, Matthias W.; Keller, Andreas | |
| article | 2021 | Deep sequencing of sncRNAs reveals hallmarks and regulatory modules of the transcriptome during Parkinson's disease progression | Kern, Fabian; Fehlmann, Tobias; Violich, Ivo; Alsop, Eric; Hutchins, Elizabeth; Kahraman, Mustafa; Grammes, Nadja L.; Guimarães, Pedro; Backes, Christina; Poston, Kathleen L.; Casey, Bradford; Balling, Rudi; Geffers, Lars; Krüger, Rejko; Galasko, Douglas; Mollenhauer, Brit; Meese, Eckart; Wyss-Coray, Tony; Craig, David W.; Van Keuren-Jensen, Kendall; Keller, Andreas | |
| article | 2020 | Competitive learning suggests circulating miRNA profiles for cancers decades prior to diagnosis | Keller, Andreas; Fehlmann, Tobias; Backes, Christina; Kern, Fabian; Gislefoss, Randi; Langseth, Hilde; Rounge, Trine B.; Ludwig, Nicole; Meese, Eckart | |
| article | 2020 | Research Output and International Cooperation Among Countries During the COVID-19 Pandemic: Scientometric Analysis | Grammes, Nadja; Millenaar, Dominic; Fehlmann, Tobias; Kern, Fabian; Böhm, Michael; Mahfoud, Felix; Keller, Andreas | |
| article | 2020 | miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems | Kern, Fabian; Fehlmann, Tobias; Solomon, Jeffrey; Schwed, Louisa; Grammes, Nadja; Backes, Christina; Van Keuren-Jensen, Kendall; Craig, David Wesley; Meese, Eckart; Keller, Andreas | |
| article | 2020 | miRSwitch: detecting microRNA arm shift and switch events | Kern, Fabian; Amand, Jeremy; Senatorov, Ilya; Isakova, Alina; Backes, Christina; Meese, Eckart; Keller, Andreas; Fehlmann, Tobias | |
| article | 2020 | Common diseases alter the physiological age-related blood microRNA profile | Fehlmann, Tobias; Lehallier, Benoit; Schaum, Nicholas; Hahn, Oliver; Kahraman, Mustafa; Li, Yongping; Grammes, Nadja; Geffers, Lars; Backes, Christina; Balling, Rudi; Kern, Fabian; Krüger, Rejko; Lammert, Frank; Ludwig, Nicole; Meder, Benjamin; Fromm, Bastian; Maetzler, Walter; Berg, Daniela; Brockmann, Kathrin; Deuschle, Christian; von Thaler, Anna-Katharina; Eschweiler, Gerhard W; Milman, Sofiya; Barziliai, Nir; Reichert, Matthias; Wyss-Coray, Tony; Meese, Eckart; Keller, Andreas | |
| article | 2020 | On the lifetime of bioinformatics web services | Kern, Fabian; Fehlmann, Tobias; Keller, Andreas | |
| article | 2020 | CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing | Li, Yongping; Fehlmann, Tobias; Borcherding, Adam; Drmanac, Snezana; Liu, Sophie; Groeger, Laura; Xu, Chongjun; Callow, Matthew; Villarosa, Christian; Jorjorian, Alexander; Kern, Fabian; Grammes, Nadja; Meese, Eckart; Jiang, Hui; Drmanac, Radoje; Ludwig, Nicole; Keller, Andreas | |
| article | 2020 | Encyclopedia of tools for the analysis of miRNA isoforms | Schmartz, Georges Pierre; Kern, Fabian; Fehlmann, Tobias; Wagner, Viktoria; Fromm, Bastian; Keller, Andreas | |
| article | 2019 | The sncRNA Zoo: a repository for circulating small noncoding RNAs in animals | Fehlmann, Tobias; Backes, Christina; Pirritano, Marcello; Laufer, Thomas; Galata, Valentina; Kern, Fabian; Kahraman, Mustafa; Gasparoni, Gilles; Ludwig, Nicole; Lenhof, Hans-Peter; Gregersen, Henrike A.; Francke, Richard; Meese, Eckart; Simon, Martin; Keller, Andreas | |
| article | 2019 | Machine Learning to Detect Alzheimer's Disease from Circulating Non-coding RNAs | Ludwig, Nicole; Fehlmann, Tobias; Kern, Fabian; Gogol, Manfred; Maetzler, Walter; Deutscher, Stephanie; Gurlit, Simone; Schulte, Claudia; von Thaler, Anna-Katharina; Deuschle, Christian; Metzger, Florian; Berg, Daniela; Suenkel, Ulrike; Keller, Verena; Backes, Christina; Lenhof, Hans-Peter; Meese, Eckart; Keller, Andreas | |
| article | 2019 | Spring is in the air: seasonal profiles indicate vernal change of miRNA activity | Ludwig, Nicole; Hecksteden, Anne; Kahraman, Mustafa; Fehlmann, Tobias; Laufer, Thomas; Kern, Fabian; Meyer, Tim; Meese, Eckart; Keller, Andreas; Backes, Christina | |
| article | 2019 | What's the target: understanding two decades of in silico microRNA-target prediction | Kern, Fabian; Backes, Christina; Hirsch, Pascal; Fehlmann, Tobias; Hart, Martin; Meese, Eckart; Keller, Andreas | |
| article | 2019 | miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database | Kehl, Tim; Kern, Fabian; Backes, Christina; Fehlmann, Tobias; Stöckel, Daniel; Meese, Eckart; Lenhof, Hans-Peter; Keller, Andreas | |
| article | 2019 | Systematic Assessment of Blood-Borne MicroRNAs Highlights Molecular Profiles of Endurance Sport and Carbohydrate Uptake | Kern, Fabian; Ludwig, Nicole; Backes, Christina; Maldener, Esther; Fehlmann, Tobias; Suleymanov, Artur; Meese, Eckart; Hecksteden, Anne; Keller, Andreas; Meyer, Tim | |
| article | 2018 | MicroRNA in diagnosis and therapy monitoring of early-stage triple-negative breast cancer | Kahraman, Mustafa; Röske, Anne; Laufer, Thomas; Fehlmann, Tobias; Backes, Christina; Kern, Fabian; Kohlhaas, Jochen; Schrörs, Hannah; Saiz, Anna; Zabler, Cassandra; Ludwig, Nicole; Fasching, Peter A.; Strick, Reiner; Rübner, Matthias; Beckmann, Matthias W.; Meese, Eckart; Keller, Andreas; Schrauder, Michael G. | |
| article | 2017 | IMOTA: an interactive multi-omics tissue atlas for the analysis of human miRNA-target interactions | Palmieri, Valeria; Backes, Christina; Ludwig, Nicole; Fehlmann, Tobias; Kern, Fabian; Meese, Eckart; Keller, Andreas | |
| article | 2017 | miRCarta: a central repository for collecting miRNA candidates | Backes, Christina; Fehlmann, Tobias; Kern, Fabian; Kehl, Tim; Lenhof, Hans-Peter; Meese, Eckart; Keller, Andreas | |
https://orcid.org/0000-0002-8223-3750